Main
!!!2020
* '''Best Paper Award:''' ''Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics'', Jacob Schreiber, Deepthi Hedge, William Noble
* '''Best Student Paper Award:''' ''Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases'', Junheng Hao, Chelsea J.-T. Ju, Muhao Chen, Yizhou Sun, Carlo Zaniolo, Wei Wang
!!!2018
* '''Best Paper Award:''' ''A Consensus Approach to Infer Tumor Evolutionary Histories'', Kiya Govek, Camden Sikes Layla Oesper
* '''Best Student Paper Award:''' ''An Integer Linear Programming Solution for the Domain-Gene-Species Reconciliation Problem'', Lei Li, Mukul S. Bansal
!!!2019
* '''Best Student Paper Award:''' ''Practical Universal k-mer Sets for Minimizer Schemes'', Dan DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford and Guillaume Marçais
!!!2017
* '''Best Paper Award:''' ''Rich chromatin structure prediction from Hi-C data'', Laraib Iqbal Malik and Robert Patro
* '''Best Student Paper Award:''' ''Exploring Frequented Regions in Pan-Genomic Graphs'', Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge and Brendan Mumey
!!!2016
* '''Best Paper Award:''' ''Bipartite matching generalizations for peptide identification in tandem mass spectrometry'', Wenruo Bai, Jeffrey Bilmes and William S. Noble
* '''Best Student Paper Award:''' ''A fast sketch-based assembler for genomes'', Priyanka Ghosh and Ananth Kalyanaraman
!!!2015
* '''Best Paper Award:''' ''An Ensemble SVM Model for the Accurate Prediction of Non-Canonical MicroRNA Targets'', Asish Ghoshal, Ananth Grama, Saurabh Bagchi, and Somali Chaterji
* '''Best Student Paper Award:''' ''An Integrated Querying of Disparate Association and Interaction Data in Biomedical Applications'', Shi Qiao, Mehmet Koyutürk, and Z. Meral Özsoyoğlu
* '''Best Poster Award:''' ''Boolean Network Modeling for Systematic identification of Anticancer Drug Resistance in Colorectal Cancer'', Pranav Srinivas
!!!!Best Student Paper Award:
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search,''' Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
!!!!Best Poster Award:
'''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,''' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
!!!!Best Paper Award:
'''Improving discrimination of essential genes by modeling local nsertion frequencies in transposon mutagenesis data,''' Michael Dejesus and Thomas Ioerger
Awards
Main.Awards History
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!!!2020
* '''Best Paper Award:''' ''Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics'', Jacob Schreiber, Deepthi Hedge, William Noble
* '''Best Student Paper Award:''' ''Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases'', Junheng Hao, Chelsea J.-T. Ju, Muhao Chen, Yizhou Sun, Carlo Zaniolo, Wei Wang
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!!!2018
* '''Best Paper Award:''' ''A Consensus Approach to Infer Tumor Evolutionary Histories'', Kiya Govek, Camden Sikes Layla Oesper
* '''Best Student Paper Award:''' ''An Integer Linear Programming Solution for the Domain-Gene-Species Reconciliation Problem'', Lei Li, Mukul S. Bansal
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* '''Best Paper Award:''' ''Identifying Symptom Clusters in Breast Cancer and Colorectal Cancer Patients using EHR Data'', Priyanka Gandhi, Xiao Luo, Susan Storey, Zuoyi Zhang, Zhi Han, Kun Huang
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!!!2019
* '''Best Student Paper Award:''' ''Practical Universal k-mer Sets for Minimizer Schemes'', Dan DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford and Guillaume Marçais
Added lines 2-6:
!!!2017
* '''Best Paper Award:''' ''Rich chromatin structure prediction from Hi-C data'', Laraib Iqbal Malik and Robert Patro
* '''Best Student Paper Award:''' ''Exploring Frequented Regions in Pan-Genomic Graphs'', Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge and Brendan Mumey
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!!!2016
* '''Best Paper Award:''' ''Bipartite matching generalizations for peptide identification in tandem mass spectrometry'', Wenruo Bai, Jeffrey Bilmes and William S. Noble
* '''Best Student Paper Award:''' ''A fast sketch-based assembler for genomes'', Priyanka Ghosh and Ananth Kalyanaraman
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!!!2015
* '''Best Paper Award:''' ''An Ensemble SVM Model for the Accurate Prediction of Non-Canonical MicroRNA Targets'', Asish Ghoshal, Ananth Grama, Saurabh Bagchi, and Somali Chaterji
* '''Best Student Paper Award:''' ''An Integrated Querying of Disparate Association and Interaction Data in Biomedical Applications'', Shi Qiao, Mehmet Koyutürk, and Z. Meral Özsoyoğlu
* '''Best Poster Award:''' ''Boolean Network Modeling for Systematic identification of Anticancer Drug Resistance in Colorectal Cancer'', Pranav Srinivas
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!!!2014
* '''Best Paper Award:''' ''Unconstrained Gene Tree Diameters for Deep Coalescence'', Paweł Górecki, Jarosław Paszek, and Oliver Eulenstein
* '''Best Student Paper Award:''' ''CNVnet: Combining Sparse Learning and Biological Networks to Capture Joint Effect of Copy Number Variants'', Zhiyong Wang, Jinbo Xu and Xinghua Shi
* '''Best Poster Award:''' ''Identification of Protein Coding Regions in RNA Transcripts'', Shiyuyun Tang, Alexandre Lomsadze and Mark Borodovsky
* '''Best Paper Award:''' ''Unconstrained Gene Tree Diameters for Deep Coalescence'', Paweł Górecki, Jarosław Paszek, and Oliver Eulenstein
* '''Best Student Paper Award:''' ''CNVnet: Combining Sparse Learning and Biological Networks to Capture Joint Effect of Copy Number Variants'', Zhiyong Wang, Jinbo Xu and Xinghua Shi
* '''Best Poster Award:''' ''Identification of Protein Coding Regions in RNA Transcripts'', Shiyuyun Tang, Alexandre Lomsadze and Mark Borodovsky
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* '''Best Poster Award:''' ''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,'' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
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* '''Best Poster Award:''' ''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,'' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
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* '''Best Student Paper Award:''' ''MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search,'' Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
* '''Best Poster Award:''' ''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,'' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
* '''Best Poster Award:''' ''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,'' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
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* '''Best Paper Award:''' ''Improving discrimination of essential genes by modeling local nsertion frequencies in transposon mutagenesis data,'' Michael Dejesus and Thomas Ioerger
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Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data
Michael Dejesus and Thomas Ioerger
Michael Dejesus and Thomas Ioerger
to:
'''Improving discrimination of essential genes by modeling local nsertion frequencies in transposon mutagenesis data,''' Michael Dejesus and Thomas Ioerger
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MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search
Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
to:
'''MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search,''' Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
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Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering
Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
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'''Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering,''' Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
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!!SIGBio Awards
!!!2013
!!!!Best Paper Award:
Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data
Michael Dejesus and Thomas Ioerger
!!!!Best Student Paper Award:
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search
Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
!!!!Best Poster Award:
Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering
Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro
!!!2013
!!!!Best Paper Award:
Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data
Michael Dejesus and Thomas Ioerger
!!!!Best Student Paper Award:
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search
Noah Daniels, Andrew Gallant, Norman Ramsey and Lenore Cowen
!!!!Best Poster Award:
Modularity and Community Detection in Semantic Similarity Networks through Spectral Based Transformation and Markov Clustering
Pietro Hiram Guzzi, Pieangelo Veltri, and Mario Cannataro